PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36679.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 344aa    MW: 37375.8 Da    PI: 6.7654
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36679.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.77e-37221332105
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec.eaesssssasnsssg..... 88 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++      +        +a++ +++++n+ +g     
  KHN36679.1  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwhpnP------NtTAADAENNNNNN-AGssdma 113
                 79**************************************************************6543221......21122222222211.1123455 PP

         TCP  89 ..kaaksaa.kskksqksaa 105
                   ++++s+  + + +++  +
  KHN36679.1 114 iaEQSESSGyNFQLQRQLGE 133
                 65333333323333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3322129IPR005333Transcription factor, TCP
PROSITE profilePS5136932.9862482IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLAELPPWHP NPNTTAADAE NNNNNNAGSS DMAIAEQSES  120
SGYNFQLQRQ LGEDHDNHHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPDIISRTNN  180
STEDLGLSLH SFQDPGLIHH GQSQAGANQT PSNDQTLFSG STQVGFEANY PRIVTWNSDA  240
STDMNRTGFM VNSPSALLGQ GGSAAYSQRG TLQSSFSPSL RPWSDIPMAS SEHHHKSQQA  300
SIFGSRFLSD ALPGFCIPAR IQGEDEGHGV GNDRPSSASP NSHH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543311.10.0PREDICTED: transcription factor TCP4
RefseqXP_006594827.10.0PREDICTED: transcription factor TCP4
RefseqXP_014621438.10.0PREDICTED: transcription factor TCP4
SwissprotQ8LPR53e-76TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0B2RWT40.0A0A0B2RWT4_GLYSO; Transcription factor TCP4
TrEMBLK7M2K40.0K7M2K4_SOYBN; Uncharacterized protein
STRINGGLYMA13G36840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-74TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]